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sureprint g3 4×44k custom oligonucleotide microarrays (design number 021966, 021362)  (Agilent technologies)


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    Structured Review

    Agilent technologies sureprint g3 4×44k custom oligonucleotide microarrays (design number 021966, 021362)
    Sureprint G3 4×44k Custom Oligonucleotide Microarrays (Design Number 021966, 021362), supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/custom-designed+microarrays/pmc10500703-584-14-13
    Average 90 stars, based on 1 article reviews
    sureprint g3 4×44k custom oligonucleotide microarrays (design number 021966, 021362) - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Methylation:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    DNA Methylation Assay:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    CpG Methylation Assay:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Expressing:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Microarray:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Generated:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    ChIP-chip:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Chromatin Immunoprecipitation:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Labeling:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Migration:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Binding Assay:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Isolation:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.

    Mutagenesis:

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the ag-1 mutant and from wild-type-like flowers as described above and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Control of Reproductive Floral Organ Identity Specification in Arabidopsis by the C Function Regulator AGAMOUS
    Article Snippet: RNA was isolated from the dexamethasone-treated and mock-treated flowers as described above, and was cohybridized to custom-designed microarrays (Agilent) as previously described ( Kaufmann et al., 2010 ).

    Article Title: Origin Replication Complex Binding, Nucleosome Depletion Patterns, and a Primary Sequence Motif Can Predict Origins of Replication in a Genome with Epigenetic Centromeres
    Article Snippet: ChIP-chip , with seven replicates, was performed according to Agilent protocols, and ChIP DNA was labeled and hybridized to custom-designed Agilent microarrays (template number available upon request) containing 60-bp probes, one every 80 bp, spanning the genome.

    Article Title: Comprehensive study of nuclear receptor DNA binding provides a revised framework for understanding receptor specificity
    Article Snippet: PBM experiments were performed using custom-designed microarrays (Agilent Technologies Inc. AMADID 084387, 4 × 180 K format).

    Article Title: The N-end rule pathway regulates pathogen responses in plants
    Article Snippet: For both transcriptomics experiments (i.e. seedlings and response to Pst AvrRpm1), total RNA was isolated from plant tissue using the Spectrum Plant total RNA kit (Sigma), and was co-hybridized to custom-designed microarrays (Agilent) as previously described in Kaufmann et al . .

    Article Title: Regulation of impulsive and aggressive behaviours by a novel lncRNA
    Article Snippet: Levels of methylation were quantified from 35 suicide and 16 control samples using custom-designed microarrays (Agilent Technologies) covering 50kb upstream MAOA gene, including the entire MAOA gene, the MAOA/B intergenic region, and a significant portion of the MAOB gene.

    Article Title: Widespread perturbation of ETS factor binding sites in cancer
    Article Snippet: CASCADE experiments were performed using custom-designed microarrays (Agilent Technologies Inc, AMADID 086310 and 086772, 4×180K format).

    Article Title: Identification of factors required for meristem function in Arabidopsis using a novel next generation sequencing fast forward genetics approach.
    Article Snippet: Although in principle many different platforms could be used for this step, we have chosen to use customdesigned Agilent microarrays to enrich the bulk segregant libraries, as this platform is highly flexible in terms of design and ordering.



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    Image Search Results


    Journal: International Journal of Health Sciences

    Article Title: Breaking new ground: Exploring de novo chromosomal rearrangements in 1p36 microdeletion

    doi:

    Figure Lengend Snippet: The microarray result indicated deletion in chromosome 1, found to be pathogenic (P), and a microduplication at chromosome 2, with variant of unknown significance

    Article Snippet: The sample was then sent to a commercial laboratory accredited by the collage of American Pathology for using whole genome oligonucleotide array comparative genomic hybridizations (CGHs) and genotype analysis using a custom-designed single nucleotide polymorphisms (SNP) microarray (GenomeDx v5).

    Techniques: Microarray, Variant Assay

    ( A ), Dot plot of RHD (NG_007494.1, x-axis) and RHCE (NG_009208.3, y-axis) ISBT genomic reference sequences created with the YASS genomic similarity search tool. The diagonal line indicates the successful forward alignment and hence the sequence similarity of the two genes over almost their entire sequence. ( B ) Schematic approach of microarray genotyping. An immobilized probe on a bead chip designed against a specific genomic locus is hybridized with a target fragment. A polymerase extends the 3’ end of the probe by one base according to the template sequence that represents the desired SNP position. dNTPs are labeled with a specific hapten for subsequent fluorescent staining. Depending on the respective extended base and the wavelength of the fluorescent signal detected, the genotype for the desired SNP position can be determined for homozygous A or B, as well as heterozygous AB individuals. ( C ) Due to sequence paralogies, such as in RHD and RHCE , the 50 bp probes are not unique enough in the genomic context to exclusively bind their desired genomic fragments. As a result, signals detected by the camera constitute complex mixed signals from both paralogous loci as well as from different alleles present that cannot be easily interpreted.

    Journal: medRxiv

    Article Title: Calling for diversity: improving transfusion safety through high-throughput blood group microarray genotyping

    doi: 10.1101/2023.12.15.23299980

    Figure Lengend Snippet: ( A ), Dot plot of RHD (NG_007494.1, x-axis) and RHCE (NG_009208.3, y-axis) ISBT genomic reference sequences created with the YASS genomic similarity search tool. The diagonal line indicates the successful forward alignment and hence the sequence similarity of the two genes over almost their entire sequence. ( B ) Schematic approach of microarray genotyping. An immobilized probe on a bead chip designed against a specific genomic locus is hybridized with a target fragment. A polymerase extends the 3’ end of the probe by one base according to the template sequence that represents the desired SNP position. dNTPs are labeled with a specific hapten for subsequent fluorescent staining. Depending on the respective extended base and the wavelength of the fluorescent signal detected, the genotype for the desired SNP position can be determined for homozygous A or B, as well as heterozygous AB individuals. ( C ) Due to sequence paralogies, such as in RHD and RHCE , the 50 bp probes are not unique enough in the genomic context to exclusively bind their desired genomic fragments. As a result, signals detected by the camera constitute complex mixed signals from both paralogous loci as well as from different alleles present that cannot be easily interpreted.

    Article Snippet: For reliable typing in a diverse cohort, a custom-designed SNP microarray ( Supplementary File 1 ) was commissioned at Illumina.

    Techniques: Sequencing, Microarray, Labeling, Staining

    Concordance between blood group typing based on microarray genotyping data and respective gold standard reference methods. For ABO (striped background) a serological assay was used as a reference. All other antigens were reference typed with MALDI-TOF genotyping. Using our approach, MNS and some Rh antigens of paralogous loci (plaid background) were called using a deep-learning-based classifier, while the remaining antigens were called using static software logic. The concordance is shown as percentage in the center of the doughnut chart for 20 antigens and blood group systems (upper part of hexagons). Besides ABO and Rh, 12 other blood group systems were typed and benchmarked. For each antigen or system, the number of typing discordances and total benchmark tests is given in the lower part of the hexagons.

    Journal: medRxiv

    Article Title: Calling for diversity: improving transfusion safety through high-throughput blood group microarray genotyping

    doi: 10.1101/2023.12.15.23299980

    Figure Lengend Snippet: Concordance between blood group typing based on microarray genotyping data and respective gold standard reference methods. For ABO (striped background) a serological assay was used as a reference. All other antigens were reference typed with MALDI-TOF genotyping. Using our approach, MNS and some Rh antigens of paralogous loci (plaid background) were called using a deep-learning-based classifier, while the remaining antigens were called using static software logic. The concordance is shown as percentage in the center of the doughnut chart for 20 antigens and blood group systems (upper part of hexagons). Besides ABO and Rh, 12 other blood group systems were typed and benchmarked. For each antigen or system, the number of typing discordances and total benchmark tests is given in the lower part of the hexagons.

    Article Snippet: For reliable typing in a diverse cohort, a custom-designed SNP microarray ( Supplementary File 1 ) was commissioned at Illumina.

    Techniques: Microarray, Serologic Assay, Software